Browsing by Author "Talwana, Herbert"
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Item Additive Main Effects and Multiplicative Interactions Analysis of Yield Performances in Cowpea Genotypes under Ugandan Environments(International Journal of Advanced Research (IJAR), 2017) Agbahoungba, Symphorien; Karungi, Jeninah; Talwana, Herbert; Badji, Arfang; Kumi, Frank; Mwila, Natasha; Edema, Richard; Gibson, Paul; Rubaihayo, PatrickYield in legumes is the result of many plant processes, which are usually expressed in yield and have been shown to be affected by management, genotype and environment. The objectives of this study were to assess the extent of genotype x environment interaction and to select the stable cowpea genotypes in Ugandan environments over seasons. Seventy-two cowpea genotypes were evaluated for yield in three locations and two seasons in Uganda. The yield data were subjected to analysis of variance and additive main effects and multiplicative interactions (AMMI) analysis. The results showed a highly significant (P<0.001) genotype by location and by year (season) interaction effects for grain yield, with 69.16% of the total variation attributable to environmental effects, 5.36% to genotypic effects and 12.74% to G x E interactions effects. Genotype MU9 had the highest yield (854.68 kgha-1) but was only adapted to specific environments (Arua 2015B and 2016A). Hence, genotypes WC 30, NE 45, NE 31, NE 51 which were equally high yielding, stable and adapted to the tested environments, and should be recommended for genetic improvement of cowpea germplasm in Uganda.Item Agricultural Nematology in East And Southern Africa: Problems, Management Strategies and Stakeholder Linkages(Pest Management Science, 2016) Talwana, Herbert; Sibanda, Zibusiso; Wanjohi, Waceke; Kimenju, Wangai; Luambano-Nyoni, Nessie; Massawe, Cornel; Davies, Keith G.; Manzanilla-López, Rosa H.; Hunt, David J.; Sikora, Richard A.; Coyne, Danny L.; Gowen, Simon R.; Kerry, Brian R.By 2050, Africa’s population is projected to hit two billion. Africa will have to increase food production more than 50% in the coming 50 years to meet the nutritional requirements of its growing population. Nowhere is the need to increase agricultural productivity more pertinent than in much of sub-Saharan Africa where it is currently static or declining. Optimal pest management will be essential as intensification of any system creates heightened selection pressures for pests. RESULTS: Plant-parasitic nematodes and their damage potential are intertwined with intensified systems and can be an indicator of unsustainable practices. As soil pests, nematode are commonly overlooked or misdiagnosed, particularly where appropriate expertise and knowledge transfer systems are meager or inadequately funded. Nematode damage to roots produces symptoms similar to nutrient deficiency, often leading to a misdiagnosis and consequent overuse of fertilizers. Damage in subsistence agriculture is exacerbated by growing crops on degraded soils and in areas of low water retention where strong root growth is vital. CONCLUSION: This review focuses on the current knowledge of economically important nematode pests affecting key crops, control methods and the research and development needs for sustainable management, stakeholder involvement and capacity building in the context of crop security in Kenya, Tanzania, Uganda and Zimbabwe.Item Chemical basis for resistance in sweetpotato Ipomoea batatas to the sweetpotato weevil Cylas puncticollis(Pure and Applied Chemistry, 2009) Stevenson, Philip C.; Muyinza, Harriet; Hall, David R.; Porter, Elaine A.; Farman, Dudley I.; Talwana, Herbert; Mwanga, Robert O. M.The aim of this work was to determine the basis of resistance in a sub-Saharan sweetpotato variety, New Kawogo, to the African sweetpotato weevil Cylas puncticollis. This insect feeds on the roots, reducing quality and yield, and is the most important production constraint of sweetpotato in Africa. Laboratory bioassays were designed to determine how the performance of weevils differed on susceptible and resistant roots. Subsequently, liquid chromatography-mass spectrometry (LC-MS) analysis of the root surface and root latex identified quantitative and qualitative differences in the chemical profiles with higher levels of octadecyl and hexadecyl esters of hydroxycinnamic acids reported in the resistant variety. The compounds were synthesized to confirm their identity and incorporated into artificial diets for bioassays on C. puncticollis. High levels of mortality and developmental inhibition were recorded for larvae feeding on treated diets, and the effect was dose-dependent. Thus, in contrast to previous work on resistant African sweetpotato cultivars, resistance in New Kawogo is not only active, but is quantifiable and manageable for breeding. Work is underway to determine what effect these compounds have on the weevils at a molecular level. The inheritance of the root latex esters will be studied in new crosses and mapped in new populations using quantitative trait loci (QTLs) that are currently being developed.Item Combining ability and heritability analysis of sweetpotato weevil resistance, root yield, and dry matter content in sweetpotato(Frontiers Media S.A., 2022-09) Mugisa, Immaculate; Karungi, Jeninah; Musana, Paul; Odama, Roy; Alajo, Agnes; Chelangat, Doreen M; Anyanga, Milton O; Oloka, Bonny M.; Gonçalves dos Santos, Iara; Talwana, Herbert; Ochwo-Ssemakula, Mildred; Edema, Richard; Gibson, Paul; Ssali, Reuben; Campos, Hugo; Olukolu, Bode A; Guilherme; Yencho, Craig; Yada, Benard; da Silva Pereira, Guilherme; Yencho, CraigEfficient breeding and selection of superior genotypes requires a comprehensive understanding of the genetics of traits. This study was aimed at establishing the general combining ability (GCA), specific combining ability (SCA), and heritability of sweetpotato weevil (Cylas spp.) resistance, storage root yield, and dry matter content in a sweetpotato multi-parental breeding population. A population of 1,896 F1 clones obtained from an 8 × 8 North Carolina II design cross was evaluated with its parents in the field at two sweetpotato weevil hotspots in Uganda, using an augmented row-column design. Clone roots were further evaluated in three rounds of a no-choice feeding laboratory bioassay. Significant GCA effects for parents and SCA effects for families were observed for most traits and all variance components were highly significant (p ≤ 0.001). Narrow-sense heritability estimates for weevil severity, storage root yield, and dry matter content were 0.35, 0.36, and 0.45, respectively. Parental genotypes with superior GCA for weevil resistance included “Mugande,” NASPOT 5, “Dimbuka-bukulula,” and “Wagabolige.” On the other hand, families that displayed the highest levels of resistance to weevils included “Wagabolige” × NASPOT 10 O, NASPOT 5 × “Dimbuka-bukulula,” “Mugande” × “Dimbuka-bukulula,” and NASPOT 11 × NASPOT 7. The moderate levels of narrow-sense heritability observed for the traits, coupled with the significant GCA and SCA effects, suggest that there is potential for their improvement through conventional breeding via hybridization and progeny selection and advancement. Although selection for weevil resistance may, to some extent, be challenging for breeders, efforts could be boosted through applying genomics-assisted breeding. Superior parents and families identified through this study could be deployed in further research involving the genetic improvement of these traits.Item Continuous Storage Root Formation and Bulking in Sweet potato(Gates Open Research, 2019) Bararyenya, Astere; Tukamuhabwa, Phinehas; Gibson, Paul; Grüneberg, Wolfgang; Ssali, Reuben; Low, Jan; Odong, Thomas; Ochwo-Ssemakula, Mildred; Talwana, Herbert; Mwila, Natasha; Mwanga, RobertSweetpotato (Ipomoea batatas (L.) Lam, family Convolvulaceae.) is one of the most important food crops worldwide, with approximately 106 million tons produced in almost 120 countries from an area of about 8 million ha and an average global yield of 11.1 tons/ha (FAO, 2016). Asia is the world’s largest sweetpotato producing continent, with 79 million tons, followed by Africa (FAOstat, 2016). About 75% of this global production is from China alone. A total of 21.3 million tons is produced in Africa, with 48% from the Great Lakes region. In East Africa, the crop is the second most important root crop after cassava and has played an important role as a famine-relief crop during its long history and has recently been reevaluated as a health-promoting food (Low et al., 2017). Uganda ranks as the fourth largest sweetpotato producer in the world after China, Nigeria and Tanzania, with a production of 2.1 million t. In Africa, Uganda is ranked third after Nigeria and Tanzania. Sweetpotato is one of the main staple crops in the food systems of Uganda, Rwanda, and Burundi with a per capita consumption of 50.9, 80.1 and 57.0 kg, respectivelyItem Factors Influencing Genomic Prediction Accuracies of Tropical Maize Resistance to Fall Armyworm and Weevils(Plants, 2021) Badji, Arfang; Machida, Lewis; Kwemoi, Daniel Bomet; Kumi, Frank; Okii, Dennis; Mwila, Natasha; Agbahoungba, Symphorien; Ibanda, Angele; Bararyenya, Astere; Ndapewa Nghituwamhata, Selma; Odong, Thomas; Wasswa, Peter; Otim, Michael; Ochwo-Ssemakula, Mildred; Talwana, Herbert; Asea, Godfrey; Kyamanywa, Samuel; Rubaihayo, PatrickGenomic selection (GS) can accelerate variety improvement when training set (TS) size and its relationship with the breeding set (BS) are optimized for prediction accuracies (PAs) of genomic prediction (GP) models. Sixteen GP algorithms were run on phenotypic best linear unbiased predictors (BLUPs) and estimators (BLUEs) of resistance to both fall armyworm (FAW) and maize weevil (MW) in a tropical maize panel. For MW resistance, 37% of the panel was the TS, and the BS was the remainder, whilst for FAW, random-based training sets (RBTS) and pedigree-based training sets (PBTSs) were designed. PAs achieved with BLUPs varied from 0.66 to 0.82 for MW-resistance traits, and for FAW resistance, 0.694 to 0.714 for RBTS of 37%, and 0.843 to 0.844 for RBTS of 85%, and these were at least two-fold those from BLUEs. For PBTS, FAWresistance PAs were generally higher than those for RBTS, except for one dataset. GP models generally showed similar PAs across individual traits whilst the TS designation was determinant, since a positive correlation (R = 0.92***) between TS size and PAs was observed for RBTS, and for the PBTS, it was negative (R = 0.44**). This study pioneered the use of GS for maize resistance to insect pests in sub-Saharan Africa.Item Genetic variation, Heritability estimates and GXE effects on yield traits of Mesoamerican common bean (Phaseolus vulgaris L) germplasm in Uganda(Plant Genetic Resources, 2018) Okii, Dennis; Mukankusi, Clare; Sebuliba, Sulaiman; Tukamuhabwa, Phinehas; Tusiime, Geoffrey; Talwana, Herbert; Odong, Thomas; Namayanja, Annet; Paparu, Pamela; Nkalubo, Stanley; Otim, Michael; Ugen, Michael; Buah, Stephen; Gepts, PaulGermplasm of common beans from the Mesoamerican gene pool races: Durango, Jalisco, Mesoamerica and Guatemala have highest genetic variation for the crop’s improvement. The objective was to assign 50 common bean germplasm in Uganda into its gene pool races based on analyses of population structure. Secondly, to estimate heritability and effects of genotype environment (GXE) interaction on common bean agronomic and yield traits in space and time. Sample genomic DNA was amplified in 2011 with 22 Simple sequence repeat markers (SSRs) and alleles separated using capillary electrophoresis. Field evaluations were conducted in 2010 and 2011 at NaCRRI and 2015 at CIAT – Kawanda. Multivariate analyses of SSRs data identified four subgroups within the germplasm: K4.1–K4.4, with corresponding Wrights fixation indices (FST) as 0.1829 for K4.1, 0.1585 for K4.4, 0.1579 for K4.2 and least for K4.3 at 0.0678. Gene pool race admixtures in the population (14%) were notable and attributed to gene flow. Four superior parents currently used in improving resistance to major diseases grouped as; Jalisco for MLB49-89A; Mesoamerica for MCM5001 and G2333; Durango for MEXICO 54. Heritability values for yield traits estimated using phenotypic data from above fixed parents, was above 0.81. Season and location had significant effect (P < 0.05) on numbers of: flower buds per inflorescence, pod formation and weight of 100 seeds. The findings will improve understanding of co-evolutionary relationships between bean hosts and pathogens for better disease management and will broaden the germplasm base for improving other tropical production constraints.Item Genome-wide association study identified candidate genes controlling continuous storage root formation and bulking in hexaploid sweetpotato(BMC plant biology, 2020) Bararyenya, Astère; Olukolu, Bode A.; Tukamuhabwa, Phinehas; Grüneberg, Wolfgang J.; Ekaya, Wellington; Low, Jan; Ochwo-Ssemakula, Mildred; Odong, Thomas L.; Talwana, Herbert; Badji, Arfang; Kyalo, Martina; Nasser, Yao; Gemenet, Dorcus; Kitavi, Mercy; Mwanga, Robert O. M.Continuous storage root formation and bulking (CSRFAB) in sweetpotato is an important trait from agronomic and biological perspectives. Information about the molecular mechanisms underlying CSRFAB traits is lacking. Results: Here, as a first step toward understanding the genetic basis of CSRFAB in sweetpotato, we performed a genome-wide association study (GWAS) using phenotypic data from four distinct developmental stages and 33,068 single nucleotide polymorphism (SNP) and insertion-deletion (indel) markers. Based on Bonferroni threshold (pvalue < 5 × 10− 7), we identified 34 unique SNPs that were significantly associated with the complex trait of CSRFAB at 150 days after planting (DAP) and seven unique SNPs associated with discontinuous storage root formation and bulking (DCSRFAB) at 90 DAP. Importantly, most of the loci associated with these identified SNPs were located within genomic regions (using Ipomoea trifida reference genome) previously reported for quantitative trait loci (QTL) controlling similar traits. Based on these trait-associated SNPs, 12 and seven candidate genes were respectively annotated for CSRFAB and DCSRFAB traits. Congruent with the contrasting and inverse relationship between discontinuous and continuous storage root formation and bulking, a DCSRFAB-associated candidate gene regulates redox signaling, involved in auxin-mediated lateral root formation, while CSRFAB is enriched for genes controlling growth and senescence. Conclusion: Candidate genes identified in this study have potential roles in cell wall remodeling, plant growth, senescence, stress, root development and redox signaling. These findings provide valuable insights into understanding the functional networks to develop strategies for sweetpotato yield improvement. The markers as well as candidate genes identified in this pioneering research for CSRFAB provide important genomic resources for sweetpotato and other root crops.Item Morpho-agronomic characterization of Lake Victoria Basin taro genotypes(Triennal Symposium, 2009) Palapala, Valerie; Nandi, Ogodo M.J.; Talwana, Herbert; Ndabikunze, Bernadette K.; Serem, Alfred K.accessions based on phenotypic characters. One hundred and seventy accessions of taro collected from the Lake Victoria basin of Kenya and Uganda were evaluated-morphologically using the IPGRI descriptors. 18 qualitative and 17 quantitative characters were studied. Hierarchical cluster analysis identified two major clusters each with various subgroups. Most qualitative and quantitative descriptors displayed considerable variability. Diversified qualitative taro characters were leaf margin color, lower leaf color, petiole color and leaf surface glossiness while growth habit, exterior corm surface texture, corm shape and corm exterior color were monomorphic. Most divergent quantitative parameters were observed in corm weight, plant span and height and petiole length while low variability was seen in the ability to produce sucker above ground, corm length and diameter. Pearson’s correlation revealed significant correlation between corm weight, corm length and corm diameter and some qualitative and quantitative taro characters. Euclidean proximity similarity matrix for all the tested taro samples was 82.1% for quantitative parameters. These data indicate significant genetic variation exists within the genotypes used in this study and that the germplasm would be of great value as a genetic resource in breeding programsItem Napier grass stunt disease prevalence, incidence, severity and genetic variability of the associated phytoplasma in Uganda(Crop Protection, 2015) Kawube, Geofrey; Talwana, Herbert; Nicolaisen, Mogens; Alicai, Titus; Otim, Michael; Kabirizi, Jolly; Mukwaya, Anthony; Nielsen, Steen LykkeThe prevalence, incidence and severity of Napier grass stunt disease (NGSD) caused by phytoplasma on Pennisetum purpureum, the main fodder for livestock under intensive and semi-intensive management systems in Uganda were determined following a field survey carried out in 17 districts. A total of 298 Napier grass fields were visited and NGSD status visually assessed and 1192 samples collected for identification and confirmation of the phytoplasma by polymerase chain reaction (PCR) assays using universal primers P1/P6 nested with R16F2n/R16R2n and, tuf primers 890/340 nested with 835 and 400. From these, 221 PCR products were sequenced and sequences aligned. Napier grass stunt disease is widely spread at an epidemic proportion, with the districts at different risk levels. The most affected districts are in central, East and North parts of the country while those in the west are least affected. Sequence alignments and Blast searches showed that the phytoplasma causing NGSD in Uganda belonged to the phytoplasma group 16SrXI, with single nucleotide sequence variants in a few districts. Therefore, there is a need for development of an area wide NGSD management strategy to contain the disease.Item Plant-Parasitic Nematodes and Food Security in Sub-Saharan Africa(Annual review of phytopathology, 2018) Coyne, Danny L.; Cortada, Laura; Dalzell, Johnathan J.; Claudius-Cole, Abiodun O.; Haukeland, Solveig; Luambano, Nessie; Talwana, HerbertSub-Saharan Africa (SSA) is a region beset with challenges, not least its ability to feed itself.Low agricultural productivity, exploding populations, and escalating urbanization have led to declining per capita food availability. In order to reverse this trend, crop production systems must intensify, which brings with it an elevated threat from pests and diseases, including plant-parasitic nematodes. A holistic systems approach to pest management recognizes disciplinary integration. However, a critical under-representation of nematology expertise is a pivotal shortcoming, especially given the magnitude of the threat nematodes pose under more intensified systems. With more volatile climates, efficient use of water by healthy root systems is especially crucial. Within SSA, smallholder farming systems dominate the agricultural landscape, where a limited understanding of nematode problems prevails. This review provides a synopsis of current nematode challenges facing SSA and presents the opportunities to overcome current shortcomings, including a means to increase nematology capacity.Item Recombination fraction and genetic linkage among key disease resistance genes (Co-42/Phg-2 and Co-5/“P.ult”) in common bean(African journal of biotechnology, 2019) Okii, Dennis; Badji, Arfang; Odong, Thomas; Talwana, Herbert; Tukamuhabwa, Phinehas; Male, Allan; Mukankusi, Clare; Gepts, PaulAnthracnose (Colletotrichum lindemuthianum), Angular leaf spot (Pseudocercospora griseola) and Pythium root rot are important pathogens affecting common bean production in the tropics. A promising strategy to manage these diseases consists of combining several resistance (R) genes into one cultivar. The aim of the study was to determine genetic linkage between gene pairs, Co-42/Phg-2, on bean-chromosome Pv08 and Co-5/“P.ult” on-chromosome Pv07, to increase the efficiency of dual selection of resistance genes for major bean diseases, with molecular markers. The level of recombination was determined by tracking molecular markers for both BC3F6 and F2 generations. Recombination fraction r, among gene pairs, the likelihood of linkage, L(r), and logarithm of odds (LOD) scores were computed using the statistical relationship of likelihood which assumes a binomial distribution. The SCAR marker pair SAB3/PYAA19 for the gene pair Co-5/“P.ult” exhibited moderate linkage (r = 32 cM with a high LOD score of 9.2) for BC3F6 population, but relatively stronger linkage for the F2 population (r = 21 cM with a high LOD score of 18.7). However, the linkage among SCAR marker pair SH18/SN02, for the gene pair Co-42/Phg-2 was incomplete for BC3F6 population (r = 47 cM with a low LOD score of 0.16) as well as F2 population (r = 44 cM with a low LOD score of 0.7). Generally, the weak or incomplete genetic linkage between marker pairs studied showed that all the four genes mentioned earlier have to be tagged with a corresponding linked marker during selection. The approaches used in this study will contribute to two loci linkage mapping techniques in segregating plant populations.Item Resistance to the Weevils Cylas puncticollis and Cylas brunneus Conferred by Sweetpotato Root Surface Compounds(Journal of Agricultural and Food Chemistry, 2013) Anyanga, M. Otema; Muyinza, Harriet; Talwana, Herbert; Hall, David R.; Farman, Dudley I.; Ssemakula, Gorrettie N.; Mwanga, Robert O. M.; Stevenson, Philip C.Seven resistant varieties of sweetpotato were compared with three susceptible varieties in field trials and laboratory bioassays and showed that resistance was an active process rather than an escape mechanism, as field resistant varieties also had reduced root damage and oviposition compared with susceptible varieties in the laboratory. Liquid chromatography−mass spectrometry (LC−MS) of root surface and epidermal extracts showed significant variation in the concentration of hexadecyl, heptadecyl, octadecyl, and quinic acid esters of caffeic and coumaric acid, with higher concentrations correlated with resistance. All compounds were synthesized to enable their positive identification. Octadecyl coumarate and octadecyl caffeate applied to the surface of susceptible varieties in laboratory bioassays reduced feeding and oviposition, as observed on roots of resistant varieties, and therefore are implicated in weevil resistance. Segregating populations from breeding programs can use these compounds to identify trait loci for resistance and enable the development of resistant varietiesItem Responses to selection for yield traits and key diseases among common bean genetic pyramids across locations(Journal of Crop Improvement, 2019) Okii, Dennis; Badji, Arfang; Odong, Thomas; Talwana, Herbert; Tukamuhabwa, Phinehas; Magdalena, William; Gepts, Paul; Mukankusi, ClareKnowledge of response to selection (R) helps to analyze the efficiency of crop-improvement programs and devise appropriate selection strategies. The objective of this study was to determine response to selection of common bean (Phaseolus vulgaris L.) genetic pyramids for diseases and yield traits. Populations evaluated included pyramided parents, climbing pyramided progenies, and checks. The trial was planted in 2016 in Uganda (Kabale and Kawanda) and Northern-Tanzania (Maruku and Kitengule) in randomized incomplete blocks with three replications. Summarized data and appropriate parameters were incorporated into the breeder’s equation (R = ih2S). R was positive for mean days to flowering (5 days) and negative for mean number of pods per plant (−9.5 pods) and 100-seed weight (−1.9 g). Diseases (anthracnose, angular leaf spot, and bean common mosaic virus) had positive, undesirable R. Generally, pyramided lines segregated at BC3F9 for disease resistance and yield traits, and thus, superior bean lines should be identified in subsequent generations, such as BC3F11.Item Temporal Dynamics of Napier Grass Stunt Disease as Influenced by Napier Grass Clones and Initial Inoculum(Journal of Experimental Agriculture International, 2015) Kawube, Geofrey; Otim, Michael; Talwana, Herbert; Alicai, Titus; Mukwaya, Anthony; Kabirizi, JollyNapier grass stunt disease (NGSD) is the main biotic factor limiting Napier grass production in the East African region. Its management is, however, hampered by inadequate epidemiological information. This study determined the temporal spread of NGSD in Napier grass fields. A field experiment was setup at National Crops Resources Research Institute, Namulonge in Uganda to determine the influence of initial inoculum and clones on the spread of NSD in the field. The experiment was arranged in a randomized Complete Block Design and replicated 4 times. The initial inoculum levels used were 0%, 10%, 20% and 30% while the clones included KW4, local/wild type and P99, respectively. Napier grass stunt disease incidence data was recorded at 60 days intervals starting 90 days after planting up to 450 days. Napier grass was cut back to a height of 5 cm above ground after each data collection. Gompertz model was found to adequately describe NGSD temporal spread, the basis on which all incidence data was transformed. Results indicate that NGSD symptoms appeared in the field after 150 days after planting. However, NGSD incidence at the time was influenced by initial inoculum levels and type of clone. Plots with higher levels of initial inoculum density reached epidemic levels faster than those without. Disease incidence increased with increase in levels of initial inoculum and time, doubling after every 13.8 to 29.8 days, as such the rate of disease spread is moderate. The disease progression was fastest in clone P99 followed by KW4 and least in local. Final NGSD incidence and Area Under Disease Progress Curve (AUDPC) were linearly related with the NGSD incidence at the time the disease was first detected; indicating that incidence at NSD detection can be used to predict the final disease and AUDPC in the field. Therefore, deployment of measures that reduce initial inoculum is important in control of the disease.