Browsing by Author "Kityo, Robert M."
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Item Discovery and Characterization of Bukakata orbivirus (Reoviridae:Orbivirus), a Novel Virus from a Ugandan Bat(Viruses, 2019) Fagre, Anna C.; Lee, Justin S.; Kityo, Robert M.; Bergren, Nicholas A.; Mossel, Eric C.; Nakayiki, Teddy; Nalikka, Betty; Nyakarahuka, Luke; Gilbert, Amy T.; Kerbis Peterhans, Julian; Crabtree, Mary B.; Towner, Jonathan S.; Amman, Brian R.; Sealy, Tara K.; Schuh, Amy J.; Nichol, Stuart T.; Lutwama, Julius J.; Miller, Barry R.; Kading, Rebekah C.While serological and virological evidence documents the exposure of bats to medicallyimportant arboviruses, their role as reservoirs or amplifying hosts is less well-characterized. We describe a novel orbivirus (Reoviridae:Orbivirus) isolated from an Egyptian fruit bat (Rousettus aegyptiacus leachii) trapped in 2013 in Uganda and named Bukakata orbivirus. This is the fifth orbivirus isolated from a bat, however genetic information had previously only been available for one bat-associated orbivirus. We performed whole-genome sequencing on Bukakata orbivirus and three other bat-associated orbiviruses (Fomede, Ife, and Japanaut) to assess their phylogenetic relationship within the genus Orbivirus and develop hypotheses regarding potential arthropod vectors. Replication kinetics were assessed for Bukakata orbivirus in three different vertebrate cell lines. Lastly, qRT-PCR and nested PCR were used to determine the prevalence of Bukakata orbivirus RNA in archived samples from three populations of Egyptian fruit bats and one population of cave-associated soft ticks in Uganda. Complete coding sequences were obtained for all ten segments of Fomede, Ife, and Japanaut orbiviruses and for nine of the ten segments for Bukakata orbivirus. Phylogenetic analysis placed Bukakata and Fomede in the tick-borne orbivirus clade and Ife and Japanaut within the Culicoides/phlebotomine sandfly orbivirus clade. Further, Bukakata and Fomede appear to be serotypes of the Chobar Gorge virus species. Bukakata orbivirus replicated to high titers (106–107 PFU/mL) in Vero, BHK-21 [C-13], and R06E (Egyptian fruit bat) cells. Preliminary screening of archived bat and tick samples do not support Bukakata orbivirus presence in these collections, however additional testing is warranted given the phylogenetic associations observed. This study provided complete coding sequence for several bat-associated orbiviruses and in vitro characterization of a bat-associated orbivirus. Our results indicate that bats may play an important role in the epidemiology of viruses in the genus Orbivirus and further investigation is warranted into vector-host associations and ongoing surveillance efforts.Item Fusarium oxysporum Race 1 resistance and quality traits variations in apple banana germplasm(Journal of Plant Breeding and Crop Science, 2020) Buregyeya, Henry; Tumuhimbise, Robooni; Matovu, Moses; Tumwesigye, Kashub S.; Kubiriba, Jerome; Nowankunda, Kephas; Tushemereirwe, Wilberforce K.; Karamura, Deborah; Karamura, Eldad; Kityo, Robert M.; Rubaihayo, PatrickMusa species, AAB genome group, commonly known as Sukali Ndizi (SND) in Uganda, has attained a substantial commercial value in the recent past owing to its superior fruit quality attributes and better prices. However, its sustainable production and productivity are highly threatened by Fusarium wilt. To facilitate large scale area expansion of this important dessert banana, the present study was carried out to identify the near-ideotypic lines of best quality fruit traits that are also resistant to Fusarium wilt. Nineteen SND ecotypes were subsequently collected from nine key SND growing districts of Uganda and evaluated in the field and laboratory for different fruit quality attributes and response to Fusarium wilt. Results showed a wide diversity among SND ecotypes for fruit-quality traits (fruit pulp texture, flavor and taste). The ecotypes were, however, not significantly different (p > 0.05) for susceptibility to FOC race 1. Cluster analysis based on organoleptic and physio-chemical properties grouped the 19 ecotypes into two major-clusters, each of which was also split into two sub-clusters. Individual subclusters summarize levels of similarity amongst the different ecotypes. The study confirmed the presence of diversity in SND germplasm that could be exploited for SND genetic improvement of the crop through hybridization and selection.Item How does Africa’s most hunted bat vary across the continent? Population traits of the straw-coloured fruit bat (Eidolon helvum) and its interactions with humans(Acta Chiropterologica, 2017) Alison J, Peel; James L. N., Wood,; Baker, Kate S.; Breed, Andrew C.; de Carvalho, Arlindo; Fernandez-Loras, Andres; Gabrieli, Harrison Sadiki; Gembu, Guy-Crispin; Kakengi, Victor A.; Kaliba, Potiphar M.; Kityo, Robert M.; Tiziana, Lembo; Fidel Esono, Mba,; Daniel, Ramos; Inaki, Rodriguez-Prieto,; Richard, Suu-Ire; Andrew A., Cunningham; Hayman, David T.S.The straw-coloured fruit bat, Eidolon helvum, is a common and conspicuous migratory species, with an extensive distribution across sub-Saharan Africa, yet hunting and habitat loss are thought to be resulting in decline in some areas. Eidolon helvum is also a known reservoir for potentially zoonotic viruses. Despite E. helvum’s importance, ecological and behavioural traits are poorly described for this species. Here we present extensive data on the distribution, migration patterns, roost size, age and sex composition of 29 E. helvum roosts from nine countries across tropical Africa, including roosts not previously described in the literature. Roost age and sex composition were dependent on timing of sampling relative to the annual birth pulse. Rather than a single ‘breeding season’ as is frequently reported for this species, regional asynchrony of reproductive timing was observed across study sites (with birth pulses variably starting in March, April, September, November or December). Considered together with its genetic panmixia, we conclude that the species has a fluid, fission-fusion social structure, resulting in different roost ‘types’ at different times of the year relative to seasonal reproduction. Bat-human interactions also varied across the species’ geographical range. In the absence of significant hunting, large urban colonies were generally tolerated, yet in regions with high hunting pressure, bats tended to roost in remote or protected sites. The extensive quantitative and qualitative data presented in this manuscript are also valuable for a wide range of studies and provide an historical snapshot as its populations become increasingly threatened.Item Neutralizing antibodies against flaviviruses, Babanki virus, and Rift Valley fever virus in Ugandan bats(Infection Ecology & Epidemiology, 2018) Kading, Rebekah C.; Kityo, Robert M.; Mossel, Eric C.; Borland, Erin M.; Nakayiki, Teddie; Nalikka, Betty; Nyakarahuka, Luke; Ledermann, Jeremy P.; Panella, Nicholas A.; Gilbert, Amy T.; Crabtree, Mary B.; Kerbis Peterhans, Julian; Towner, Jonathan S.; Amman, Brian R.; Sealy, Tara K.; Nichol, Stuart T.; Powers, Ann M.; Lutwama, Julius J.; Miller, Barry R.A number of arboviruses have previously been isolated from naturally-infected East African bats, however the role of bats in arbovirus maintenance is poorly understood. The aim of this study was to investigate the exposure history of Ugandan bats to a panel of arboviruses. Materials and methods: Insectivorous and fruit bats were captured from multiple locations throughout Uganda during 2009 and 2011–2013. All serum samples were tested for neutralizing antibodies against West Nile virus (WNV), yellow fever virus (YFV), dengue 2 virus (DENV-2), Zika virus (ZIKV), Babanki virus (BBKV), and Rift Valley fever virus (RVFV) by plaque reduction neutralization test (PRNT). Sera from up to 626 bats were screened for antibodies against each virus. Results and Discussion: Key findings include the presence of neutralizing antibodies against RVFV in 5/52 (9.6%) of little epauletted fruit bats (Epomophorus labiatus) captured from Kawuku and 3/54 (5.6%) Egyptian rousette bats from Kasokero cave. Antibodies reactive to flaviviruses were widespread across bat taxa and sampling locations. Conclusion: The data presented demonstrate the widespread exposure of bats in Uganda to arboviruses, and highlight particular virus-bat associations that warrant further investigation.Item Phylogeny is a stronger predictor of activity than allometry in an African mammal community(Biological Journal of the Linnean Society, 2022) Kasozi, Herbert; Moll, Remington J.; Kityo, Robert M.; Montgomery, Robert A.In promoting coexistence, sympatric species often partition shared resources along spatio-temporal domains. Similarly sized and phylogenetically close species, for instance, partition the times of day in which they are active to limit interference competition. Given that variation in species body mass has evolutionary underpinnings, species activity levels (time spent active in a 24-h daily cycle) within animal communities might be structured by phylogeny. However, few studies have tested this hypothesis across animal communities, and none among mediumsized to large mammals. We quantified the relative contributions of phylogeny and body mass in predicting activity levels in a community of 22 sympatric mammal species in Murchison Falls National Park, Uganda. We show that phylogeny is a stronger predictor of species activity levels than body mass. Our findings provide empirical evidence for the phylogenetic structuring of mammal activity in diverse communities. More broadly, our results suggest that evolutionary relationships mask allometry in predicting species traits in diverse animal communities.