Browsing by Author "Kamya, Deus"

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    Comparison of the microbial composition of African fermented foods using amplicon sequencing
    (Scientific reports, 2019) Diaz, Maria; Kellingray, Lee; Akinyemi, Nwanneka; Olaoluwa Adefiranye, Oyetayo; Houngbédji, Marcel; Kamya, Deus; Muzira Mukisa, Ivan; Obodai, Mary; Mayer, Melinda J.; Oguntoyinbo, Folarin A.; Narbad, Arjan
    Fermented foods play a major role in the diet of people in Africa, where a wide variety of raw materials are fermented. Understanding the microbial populations of these products would help in the design of specific starter cultures to produce standardized and safer foods. In this study, the bacterial diversity of African fermented foods produced from several raw materials (cereals, milk, cassava, honey, palm sap, and locust beans) under different conditions (household, small commercial producers or laboratory) in 8 African countries was analysed by 16S rRNA gene amplicon sequencing during the Workshop “Analysis of the Microbiomes of Naturally Fermented Foods Training Course”. Results show that lactobacilli were less abundant in fermentations performed under laboratory conditions compared to artisanal or commercial fermentations. Excluding the samples produced under laboratory conditions, lactobacilli is one of the dominant groups in all the remaining samples. Genera within the order Lactobacillales dominated dairy, cereal and cassava fermentations. Genera within the order Lactobacillales, and genera Zymomonas and Bacillus were predominant in alcoholic beverages, whereas Bacillus and Lactobacillus were the dominant genera in the locust bean sample. The genus Zymomonas was reported for the first time in dairy, cereal, cassava and locust bean fermentations.
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    Mycobacteriophages Exhibit Antibiofilm Activity at High Multiplicities of Infection
    (2022) Ssengooba, Willy; Kamya, Deus; Nakavuma, Jesca; Achan, Beatrice; Semanda, Joseph
    Biofilm formation has been shown to be a very effective survival mechanism used by many bacteria pathogens, including Mycobacterium tuberculosis (Mtb). However, unlike other bacteria, mycobacterial biofilms tend to be very rich in lipids, and this accords them much more resilience than their carbohydratebased counterparts’. Mycobacteriophage therapy, as an up-and-coming technology, is envisaged to revolutionize the treatment of tuberculosis (TB), particularly involving antibiotic-resistant Mtb. Antibiofilm activity, therefore, is a highly sought-after characteristic of mycobacteriophages intended for therapeutic use. Here we investigated the in-vitro activity of a three-phage cocktail against biofilms of forty-six clinically isolated Mtb using the MBEC biofilm device. We demonstrate that multiplicity of infection and the age of the biofilms are significant determinants of phage antibiofilm activity. Furthermore, based on our host range data, we hypothesize that mycobacteriophages might have a preference for Mtb hosts from pulmonary infection sites compared to those from extrapulmonary sites. If accurate, this finding could have profound implications for both diagnostic and therapeutic applications of mycobacteriophages. Overall, our findings demonstrate the antibiofilm potential of mycobacteriophages and continue to endorse mycobacteriophage therapy as a treatment alternative to our failing antibiotic arsenal. We recommend further investigations to; understand the basis of the observed host preference in mycobacteriophages, evaluate combinatorial therapy of phages and antibiotics, and screen the phages for undesirable genes.