Browsing by Author "Balyejusa Kizito, Elizabeth"
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Item Accuracy of using leaf blade length and leaf blade width measurements to calculate the leaf area of Solanum aethiopicum Shum group(Heliyon, 2018) Nakanwagi, Mildred Julian; Sseremba, Godfrey; Nahamya, Pamela Kabod; Masanza, Michael; Balyejusa Kizito, ElizabethLeaf area is an important parameter when determining growth response under normal as well as stressed environments. No attempt had been made to come up with an affordable but accurate alternative of measuring leaf size in research neglected leafy vegetable crops. Other techniques such as use of leaf area meters are either destructive, expensive or both. A study was conducted to determine leaf area in like-shaped leaves of research neglected crop plants, taking case of S. aethiopicum Shum group (SAS) germplasm. Data was collected on 552 individual plants (including pure lines and hybrids) at eight weeks after planting where a third fully open leaf from top of each plant was considered. Leaf blade length (LBL) and leaf blade width (LBW) were linearly measured while leaf area (LA) was measured using a leaf area meter. This was followed by correlation and regression analysis of LA with LBL, LBW, and LBL þ LBW. Correlation coefficients at p < 0.001 ranged between 0.84 and 0.92, 0.79 and 0.88, 0.86 and 0.95 for total germplasm, pure lines and hybrids, respectively. The coefficient of determination (R2) ranged between 0.72 and 0.92. The best prediction for LA was obtained with hybrid plants (LA ¼ -165.82 þ 5.38LBL þ 16.17LBW) at R2 of 92%. The implication is that we can accurately and affordably predict LA from duo measurements of LBL and LBW in SAS as well as in other crops having similar leaf shapes.Item Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome(GigaScience, 2019) Song, Bo; Song, Yue; Fu, Yuan; Balyejusa Kizito, Elizabeth; Ndagire Kamenya, Sandra; Nahamya Kabod, Pamela; Liu, Huan; Muthemba, Samuel; Kariba, Robert; Njuguna, Joyce; Maina, Solomon; Stomeo, Francesca; Djikeng, Appolinaire; Hendre, Prasad S.; Chen, Xiaoli; Chen, Wenbin; Li1, Xiuli; Sun, Wenjing; Wang, Sibo; Cheng, Shifeng; Muchugi, Alice; Jamnadass, Ramni; Shapiro, Howard-Yana; Van Deynze, Allen; Yang, Huanming; Wang, Jian; Xu, Xun; Achieng Odeny, Damaris; Liu, XinThe African eggplant (Solanum aethiopicum) is a nutritious traditional vegetable used in many African countries, including Uganda and Nigeria. It is thought to have been domesticated in Africa from its wild relative, Solanum anguivi. S. aethiopicum has been routinely used as a source of disease resistance genes for several Solanaceae crops, including Solanum melongena. A lack of genomic resources has meant that breeding of S. aethiopicum has lagged behind other vegetable crops. Results: We assembled a 1.02-Gb draft genome of S. aethiopicum, which contained predominantly repetitive sequences (78.9%). We annotated 37,681 gene models, including 34,906 protein-coding genes. Expansion of disease resistance genes was observed via 2 rounds of amplification of long terminal repeat retrotransposons, which may have occurred ∼1.25 and 3.5 million years ago, respectively. By resequencing 65 S. aethiopicum and S. anguivi genotypes, 18,614,838 single-nucleotide polymorphisms were identified, of which 34,171 were located within disease resistance genes. Analysis of domestication and demographic history revealed active selection for genes involved in drought tolerance in both “Gilo” and “Shum” groups. A pan-genome of S. aethiopicum was assembled, containing 51,351 protein-coding genes; 7,069 of these genes were missing from the reference genome. Conclusions: The genome sequence of S. aethiopicum enhances our understanding of its biotic and abiotic resistance. The single-nucleotide polymorphisms identified are immediately available for use by breeders. The information provided here will accelerate selection and breeding of the African eggplant, as well as other crops within the Solanaceae family.Item The effect of cassava mosaic disease on the genetic diversity of cassava in Uganda(Euphytica, 2005) Balyejusa Kizito, Elizabeth; Bua, Anton; Fregene, Martin; Egwang, Thomas; Gullberg, Urban; Westerbergh, AnnaCassava (Manihot esculenta) is a tropical crop that is grown in Africa, Latin America and Southeast Asia. Cassava was introduced from Latin America into West and East Africa at two independent events. In Uganda a serious threat to cassava’s survival is the cassava mosaic disease (CMD). Uganda has had two notable CMD epidemics since the introduction of cassava in the 1850s causing severe losses. SSR markers were used to study the effect of CMD on the genetic diversity in five agroecologies in Uganda with high and low incidence of CMD. Surprisingly, high gene diversity was detected. Most of the diversity was found within populations, while the diversity was very small among agroecological zones and the high and low CMD incidence areas. The high genetic diversity suggests a mechanism by which diversity is maintained by the active involvement of the Ugandan farmer in continuously testing and adopting new genotypes that will serve their diverse needs. However, in spite of the high genetic diversity we found a loss of rare alleles in areas with high CMD incidence. To study the effect of the introgression history on the gene pool the genetic differentiation between East and West Africa was also studied. Genetic similarities were found between the varieties in Uganda and Tanzania in East Africa and Ghana in West Africa. Thus, there is no evidence for a differentiation of the cassava gene pool into a western and an eastern genetic lineage. However, a possible difference in the genetic constitution of the introduced cassava into East and West Africa may have been diminished by germplasm movement.Item Effect of Different Rates of Poultry Manure and Bio-Slurry on the Yield of Solanum aethiopicum Shum(Journal of Agricultural Science, 2018) Nanyanzi, Mary; Balyejusa Kizito, Elizabeth; Masanza, Michael; Sseruwu, Godfrey; Makoma Tenywa, MosesPoor soil fertility remains the major cause of low crop productivity on smallholder farms that are engaging in vegetable production in sub-Saharan Africa. Appropriate soil fertility regimes are therefore critical for improving crop productivity. Its yield has remained low mainly due to poor soil fertility. A field experiment in two different seasons was planted in a Completely Randomized Block Design using Solanum aethiopicum Shum (Nakati). The treatments were 3 sole fertilizer options applied at the following rates: poultry manure and bio-slurry manure at 5, 10, 15, 20, 25 and 30 t ha-1, NPK (25:5:5) at the recommend application rate for tomato which is a sister crop and a control without any fertilizer. Crop budgets were used to determine the economic optimum rates of both sole applications of manure and combinations of manure with NPK. The sole applications and showed significantly (p ≤ 0.05) increased the yield of S. aethiopicum compared with the control. The established biological optimum rates were at 24.19 t ha-1 and 21.51 t ha-1 for poultry manure and bio-slurry respectively. Using the crop budgets it was concluded that the established economic optimum rates were 20 t ha-1 and 10 t ha-1 for sole poultry manure and bio-slurry respectively. Recommendations for use of sole poultry manure and bioslurry at the rate of 20 t ha-1 and 10 t ha-1 respectively were made.Item Farmer preferred traits and genotype choices in Solanum aethiopicum L., Shum group(Journal of ethnobiology and ethnomedicine, 2021) Nakyewa, Brenda; Sseremba, Godfrey; Kabod, Nahamya Pamela; Rwothtimutung, Moses; Kyebalyenda, Tadeo; Waholi, Kenneth; Buteme, Ruth; Nakanwangi, Mildred Julian; Bishop, Gerard; Balyejusa Kizito, ElizabethSolanum aethiopicum L. is a nutrient dense African indigenous vegetable. However, advancement of its improved varieties that can increase productivity, household income, and food security has not been prioritized. Further still, studies on some of the crops that have been worked have indicated that it is not a guarantee that the improved varieties will be accepted by the end users and therefore there is need to identify and profile what genotypes are of interest to farmers and their preferred traits through inclusive participatory evaluations. Methodology: Farmer participatory evaluations were conducted to profile farmers’ traits of interest and preferred genotypes. A total of 24 genotypes were established in three replications in 6 farms in 3 districts; Wakiso, Mukono, and Luwero as these are the major producing districts of the vegetable in Uganda. A total of 177 sex-disaggregated farmers were engaged in scoring the genotypes for pest, disease and drought tolerance, general appeal, leaf yield, leaf texture, and seed yield for best 10 genotypes under each variable. Results: Non-significant differences in trait (p > 0.05) and genotype preferences (p > 0.05) were obtained between men and women. The most desired farmer traits were seed and leaf yield, followed by pest and disease resistance. The overall preferred genotype in terms of disease and pest resistance, leaf yield, leaf texture, and seed yield were E12 followed by E11. Conclusion: Gender does not seem to influence farmer choices for the S. aethiopicum, Shum group, indicating an opportunity for single variety prototype advancement by breeders and dissemination by seed companies.Item Genetic diversity and variety composition of cassava on smallscale farms in Uganda: an interdisciplinary study using genetic markers and farmer interviews(Genetica, 2007) Balyejusa Kizito, ElizabethCassava is a tropical crop and grown for its tuberous starchy roots. In Africa it is mainly cultivated by small-scale farmers who observe, select and name their cassava varieties based on morphology, food, social and economic interest. Here we have used an interdisciplinary approach involving farmer interviews, genetic markers and morphological descriptors to study the composition of cassava varieties on smallscale farms in 11 villages located in three districts in Uganda, the genetic structure within and between these varieties and their morphology. The composition of local, newly introduced and improved varieties differed widely between villages and districts. The Ugandan farmers in our study seemed to adopt improved varieties to a greater extent when there was a nearby market, prevalence of disease epidemics and good extension service. We found considerable genetic variation both within and between cassava varieties though the variation was larger between varieties. However, most local and improved varieties showed predominating genotypes at many loci. Accessions of commonly grown varieties meeting farmers’ preferences could therefore be selected and implemented in future breeding programmes involving development, dissemination and adoption. The like-named varieties in different villages were genetically similar, demonstrating farmers’ ability to differentiate and maintain the same variety over large areas. However, some varieties with different names in different villages showed both genetic and morphological similarity, suggesting that farmers may rename plants when they are introduced into their fields. The large differences found in variety and genetic composition between villages and districts in Uganda may be a result of the diverse needs and growing conditions characteristic for traditional farming system. This suggests that efforts to conserve and increase the genetic diversity in farmers’ fields will require policies tailored to each areaItem Heritability of drought resistance in Solanum aethiopicum Shum group and combining ability of genotypes for drought tolerance and recovery(Scientia Horticulturae, 2018) Sseremba, Godfrey; Tongoona, Pangirayi; Eleblu, John; Danquah, Eric Yirenkyi; Balyejusa Kizito, ElizabethDrought tolerance is a complex trait whose inheritance had not been investigated in Solanum aethiopicum L. Shum group. This is partly because of perceived cross incompatibilities in the crop. This study relied on 24 successful crosses from an incomplete 9×4 North Carolina II mating design, evaluated under five watering conditions based on plant growth stage and watering level in order to determine the heritability of drought resistance and combining ability. Subsequent data analyses were based on restricted maximum likelihood. Overall, specific combining ability (SCA) effects were significant across and within watering environments for all study traits. The most highly heritable traits (in the narrow-sense) were identified as leaves per plant, chlorophyll content (CHL), leaf fresh yield and leaf dry yield while leaf area (LA), leaf relative water content (LRWC) and leaf mass area (LMA) were least heritable. However, the broad sense heritability (H2) was over 0.80 for seven of the traits, indicating that dominance gene action surpass additive gene effects for drought resistance in S. aethiopicum Shum. Further analysis showed that LA is suited for selection of best combiners under wellwatered and drought-stress (DS) treatments. The LRWC served best in separating the SCA effects of crosses under DS. The CHL produced clear separations of SCA effects under both DS and drought recovery while LMA served best under the latter.Item Identification of growth stage specific watering thresholds for drought screening in Solanum aethiopicum Shum(Scientific Reports, 2020) Nakanwagi, Mildred Julian; Sseremba, Godfrey; Kabod, Nahamya Pamela; Masanza, Michael; Balyejusa Kizito, ElizabethEffective phenotyping for drought resistance is a pre-requisite for identification of modest crop varieties for farmers. For neglected and underutilized crops such as Solanum aethiopicum Shum group, no drought screening protocol based on rigorous iterations has been documented. A split-plot nested treatment structure was arranged in an experiment to identify growth stage-specific watering thresholds for this crop. Three plant growth stages (main plot; seedling, vegetative and flowering), watering regime at plant growth stage (2 regimes; well-watered and drought stressed) and day since last watering at plant growth stage were evaluated for soil moisture content (SMC), leaf wilting score (LWS), number of green leaves per plant (LPP) and leaf blade width (LBW). Highly significant differences (p < 0.001) were found at the different plant growth stages, watering regime (WR) within plant growth stage, and day within WR and plant growth stage. Under drought stress treatment, SMC declined exponentially at each stage. The earliest leaf wilting, reduction in LPP and LBW were generally observed at flowering followed by vegetative and slowest at the seedling stage. For future effective drought phenotyping studies in S. aethiopicum Shum and related crops, we recommend setting minimum drought stress treatments below 18% SMC at which the LWS is ≥2 at the vegetative.Item Intraspecific crossability and compatibility within Solanum aethiopicum(Heliyon, 2021) Buteme, Ruth; Nakajiri, Mary; Kucel, Newton; Nahamya Kabod, Pamela; Sseremba, Godfrey; Balyejusa Kizito, ElizabethUnderstanding hybridization barriers is relevant for germplasm conservation and utilization. The prezygotic barriers to hybridization include floral morphological differences like pistil and stamen length, pollen characteristics and pollen-pistil interactions. This study sought to elucidate the reproductive biology of Solanum aethiopicum; its mating systems and compatibility barriers. Eight genotypes of Solanum aethiopicum were examined for differences in floral morphology, phenology and cross compatibility in a full diallel mating design, with assessment of fruit set, seed set and seed viability. In-vivo pollen tube growth was observed for failed crosses at 24, 48 and 72 h after pollination. All genotypes had heterostyly flowers, with predominantly small white petals. Incompatibility was observed in five out of 39 combinations. All selfed genotypes displayed compatibility implying the genotypes are self-compatible. Pollen–pistil incompatibility, which was exhibited in four out of the five failed cross combinations, occurred on the stigma, upper style and lower style, a phenomenon typical in Solanaceae. Solanum aethiopicum is self-compatible and majorly self-pollinating but has features that support cross-pollination.Item Morphological distinctiveness between Solanum aethiopicum Shum group and its progenitor(Journal of Plant Breeding and Crop Science, 2017) Sseremba, Godfrey; Tongoona, Pangirayi; Yaw Eleblu, John Savior; Yirenkyi Danquah, Eric; Kabod, Nahamya Pamela; Balyejusa Kizito, ElizabethUse of morphological markers offers an alternative in germplasm discrimination of research-neglected crop species. A collection of 25 accessions including five wild progenitors was evaluated in screen house to identify the morphological difference between Solanum aethiopicum Shum and Solanum anguivi. An Unweighted Pair Group Method with Arithmetic mean hierarchical clustering revealed presence of moderate structure with a cophenetic correlation coefficient of 0.73. Five distinct clusters were produced; the progenitor accessions for the S. aethiopicum Shum were grouped in their own cluster. The Richness, Shannon-Weaver and Simpson indices were also different among qualitative variable categories. A ‘prcomp’ function based Principal component analysis (PCA) in R on quantitative variables indicated that days to germination and emergence, cotyledonous leaf length, cotyledonous leaf width, shoot biomass, plant height, petiole length, days to first flowering opening, plant width, plant branching, and number of leaves per plant are the major drivers of variability in the study accessions. Further, results from canonical discriminant analysis to discern between the S. aethiopicum and its progenitor accession groups showed that the days to germination and emergence provide the best separation; with the former emerging earlier than the latter. The mean values for flowering time, leaves per plant, number of branches per plant and plant height were more favorable for the Shum than its wild progenitor accessions. The study revealed that morphological markers are useful in distinguishing between the S. aethiopicum Shum and its progenitor accessions.Item Performance of Solanum aethiopicum Shum group accessions under repetitive drought stress(Journal of Plant Breeding and Crop Science, 2017) Nakanwagi, Mildred Julian; Sseremba, Godfrey; Masanza, Michael; Balyejusa Kizito, ElizabethDrought is a serious climatic hazard to crop production, more especially when it occurs repeatedly. This created a need to identify repetitive drought tolerant varieties that recover following exposure to drought. Twenty accessions of Solanum aethiopicum Shum group were evaluated for their response to repeated drought exposure in a screen house at Uganda Christian University stressed and well-watered conditions in a split-plot arrangement. Data was collected on growth and yield parameters namely leaf area, plant canopy width, plant height, plant branching, fresh leaf weight, fresh shoot biomass, and harvest index. Exposure of plants to repetitive drought stress led to significant decrease in all evaluated growth parameters at p<0.001 except for plant branching. Similarly, yield parameters exhibited a highly significant difference among accessions and between water levels at p<0.001. Principal component analysis of growth rate traits showed that leaf area contributed to the highest variation for recovery from repetitive drought stress among accessions. The accessions that recovered best from drought stress include SAS108/2015, SAS163/P/2015, SAS183/G/2015, and SAS168/G/2015. For yield parameters, the accessions SAS137/2015, SAS148/2015, SAS108/P/2015, and SAS160/2015 had the highest dry shoot biomass. These findings indicate prospect for improvement of tolerance to repetitive drought stress in S. aethiopicum Shum group.Item Quantitative trait loci controlling cyanogenic glucoside and dry matter content in cassava (Manihot esculenta Crantz) roots(Hereditas, 2007) Balyejusa Kizito, Elizabeth; RoNnberg-WaStljung, Ann-Christino; Egwang, Thomas; Gullberg, Urban; Fregene, Martin; Westerbergh, AnnaCassava (Manihot esculenta Crantz) is a starchy root crop grown in the tropics mainly by small-scale farmers even though agro-industrial processing is rapidly increasing. For this processing market improved varieties with high dry matter root content (DMC) is required. Potentially toxic cyanogenic glucosides are synthesized in the leaves and translocated to the roots. Selection for varieties with low cyanogenic glucoside potential (CNP) and high DMC is among the principal objectives in cassava breeding programs. However, these traits are highly influenced by the environmental conditions and the genetic control of these traits is not well understood. An S1 population derived from a cross between two bred cassava varieties (MCOL 1684 and Rayong 1) that differ in CNP and DMC was used to study the heritability and genetic basis of these traits. A broad-sense heritability of 0.43 and 0.42 was found for CNP and DMC, respectively. The moderate heritabilities for DMC and CNP indicate that the phenotypic variation of these traits is explained by a genetic component. We found two quantitative trait loci (QTL) on two different linkage groups controlling CNP and six QTL on four different linkage groups controlling DMC. One QTL for CNP and one QTL for DMC mapped near each other, suggesting pleiotrophy and/or linkage of QTL. The two QTL for CNP showed additive effects while the six QTL for DMC showed additive effect, dominance or overdominance. This study is a first step towards developing molecular marker tools for efficient breeding of CNP and DMC in cassava.Item Stability of Solanum aethiopicum Shum accessions under varied water deficit stress levels and identification of pertinent breeding traits for resistance to water shortage(Euphytica, 2018) Sseremba, Godfrey; Tongoona, Pangirayi; Yaw Eleblu, John Savior; Danquah, Eric Yirenkyi; Kaweesi, Tadeo; Baguma, Yona; Masanza, Michael; Balyejusa Kizito, ElizabethDrought is a major constraint to productivity of Solanum aethiopicum ‘Shum’ group due to loss in market and nutrient value of stressed plants. This study evaluated S. aethiopicum Shum group accessions to identify genotypes (G) that excel across moisture deficit stress levels (WLs). A split-plot arrangement composed of four WLs and twenty accessions of S. aethiopicum as main plot and subplot factors, respectively, was implemented in a screenhouse, and repeated for two experiments. In each experiment, there was a highly significant effect of at least two WLs on mean performance among at least two accessions for most of the traits at p\0.05. Further, very highly significant WL 9 G interactions were obtained for leaf relative water content (LRWC), leaves per plant (LPP) and plant height (PH), and nonsignificant for leaf blade length and leaf blade width. The order of priority as breeding traits for stability superiority across WLs was suggested as LRWC[PH[LPP. Consequently, based on LRWC, the most superiorly stable accessions were identified as accession 160 followed by accessions 145, 137, 108P and 184G while the least stable ones were identified as accessions 163G, 141, 163 and 108. The broad sense heritability (H2) for each of the three recommended traits for drought resistance breeding was above 0.9 thus supportive for a good response to selection. Drought stress negatively affected the performance of S. aethiopicum Shum group but the exhibited variation allowed for selection of superiorly stable genotypes.