Browsing by Author "Agbahoungba, Symphorien"
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Item Additive Main Effects and Multiplicative Interactions Analysis of Yield Performances in Cowpea Genotypes under Ugandan Environments(International Journal of Advanced Research (IJAR), 2017) Agbahoungba, Symphorien; Karungi, Jeninah; Talwana, Herbert; Badji, Arfang; Kumi, Frank; Mwila, Natasha; Edema, Richard; Gibson, Paul; Rubaihayo, PatrickYield in legumes is the result of many plant processes, which are usually expressed in yield and have been shown to be affected by management, genotype and environment. The objectives of this study were to assess the extent of genotype x environment interaction and to select the stable cowpea genotypes in Ugandan environments over seasons. Seventy-two cowpea genotypes were evaluated for yield in three locations and two seasons in Uganda. The yield data were subjected to analysis of variance and additive main effects and multiplicative interactions (AMMI) analysis. The results showed a highly significant (P<0.001) genotype by location and by year (season) interaction effects for grain yield, with 69.16% of the total variation attributable to environmental effects, 5.36% to genotypic effects and 12.74% to G x E interactions effects. Genotype MU9 had the highest yield (854.68 kgha-1) but was only adapted to specific environments (Arua 2015B and 2016A). Hence, genotypes WC 30, NE 45, NE 31, NE 51 which were equally high yielding, stable and adapted to the tested environments, and should be recommended for genetic improvement of cowpea germplasm in Uganda.Item Factors Influencing Genomic Prediction Accuracies of Tropical Maize Resistance to Fall Armyworm and Weevils(Plants, 2021) Badji, Arfang; Machida, Lewis; Kwemoi, Daniel Bomet; Kumi, Frank; Okii, Dennis; Mwila, Natasha; Agbahoungba, Symphorien; Ibanda, Angele; Bararyenya, Astere; Ndapewa Nghituwamhata, Selma; Odong, Thomas; Wasswa, Peter; Otim, Michael; Ochwo-Ssemakula, Mildred; Talwana, Herbert; Asea, Godfrey; Kyamanywa, Samuel; Rubaihayo, PatrickGenomic selection (GS) can accelerate variety improvement when training set (TS) size and its relationship with the breeding set (BS) are optimized for prediction accuracies (PAs) of genomic prediction (GP) models. Sixteen GP algorithms were run on phenotypic best linear unbiased predictors (BLUPs) and estimators (BLUEs) of resistance to both fall armyworm (FAW) and maize weevil (MW) in a tropical maize panel. For MW resistance, 37% of the panel was the TS, and the BS was the remainder, whilst for FAW, random-based training sets (RBTS) and pedigree-based training sets (PBTSs) were designed. PAs achieved with BLUPs varied from 0.66 to 0.82 for MW-resistance traits, and for FAW resistance, 0.694 to 0.714 for RBTS of 37%, and 0.843 to 0.844 for RBTS of 85%, and these were at least two-fold those from BLUEs. For PBTS, FAWresistance PAs were generally higher than those for RBTS, except for one dataset. GP models generally showed similar PAs across individual traits whilst the TS designation was determinant, since a positive correlation (R = 0.92***) between TS size and PAs was observed for RBTS, and for the PBTS, it was negative (R = 0.44**). This study pioneered the use of GS for maize resistance to insect pests in sub-Saharan Africa.Item Genetic diversity and population structure of Peronosclerospora sorghi isolates of Sorghum in Uganda(International Journal of Environment, Agriculture and Biotechnology (IJEAB), 2018) Kumi, Frank; Agbahoungba, Symphorien; Badji, Arfang; Mwila, Natasha; Ibanda, Angele; Anokye, Michael; Odong, Thomas; Wasswa, Peter; Ochwo- Ssemakula, Mildred; Tusiime, Geoffrey; Biruma, Moses; Kassim, Sadik; Rubaihayo, PatrickSorghum is the third most important staple cereal crop in Uganda after maize and millet. Downy mildew disease is one of the most devastating fungal diseases which limits the production and productivity of the crop. The disease is caused by an obligate fungus, Peronosclerospora sorghi (Weston & Uppal) with varying symptoms. Information on the genetic diversity and population structure of P.sorghi in sorghum is imperative for the screening and selection for resistant genotypes and further monitoring possible mutant(s) of the pathogen. Isolates of P. sorghi infecting sorghum are difficult to discriminate when morphological descriptors are used. The use of molecular markers is efficient, and reliably precise for characterizing P. sorghi isolates. This study was undertaken to assess the level of genetic diversity and population structure that exist in P. sorghi isolates in Uganda.Item Genetic inheritance of resistance to Fusarium redolens in cowpea(Journal of Plant Breeding and Crop Science, 2017) Wanjala, Namasaka Roy; Tusiime, Geoffrey; Orawu, Martin; Paul, Gibson; Agbahoungba, Symphorien; Mahulé Elysé Boris, Alladassi; Edema, RichardFusarium related root rots have been associated with reduced cowpea productivity in Uganda. Sources of genetic resistance to Fusarium redolens which was found to be the most virulent have been identified but the mode of inheritance of the genes conferring the resistance is unknown. This study aims to investigate how the genes for resistance to F. redolens are inherited in cowpea. Four F. redolens root rot resistant cowpea genotypes were crossed with four intermediately resistant and 2 susceptible cowpea genotypes using North Carolina mating design II. The F1 and the parents were evaluated and data were collected on resistance to seed rot, leaf chlorophyll amount, produced lateral roots, response to plant mortality and root rot severity. Results revealed that additive gene effects were significant for all evaluated traits and non-additive genetic effects were significant in resistance to seed rot and chlorophyll amount. General combining ability (GCA) effects showed that the Asontem genotype was a good combiner for increased lateral roots production and resistance to root rot. Degree of dominance estimates revealed that response to plant mortality, root rots and increased lateral root production traits were recessively inherited while seed rot and amount of leaf chlorophyll were dominantly inherited.Item Inheritance of cowpea resistance to flower thrips in Uganda germplasm(Journal of Plant Breeding and Crop Science, 2018) Agbahoungba, Symphorien; Karungi, Jeninah; Badji, Arfang; Sadik, Kassim; Gibson, Paul; Edema, Richard; Assogbadjo, Achille E.; Rubaihayo, Patrick R.Flower thrips [Megalurothrips sjostedti (Trybom)] is the most damaging insect pest on cowpea. However, information regarding the nature of gene action governing the inheritance of resistance to thrips is not available for cowpea genotypes in Uganda. This study was carried out to determine the inheritance pattern of cowpea resistance to flower thrips. Five resistant cowpea genotypes and three susceptible genotypes were crossed in full diallel mating design. F2 progenies were evaluated along with the parents in alpha lattice design with two replications under natural thrips infestation at Kabanyolo, Arua and Serere in Uganda. Combining ability analysis was performed using method one and model one of diallel analysis. The results showed that the environmental effects were highly significant (P<0.001). Additive, dominance and epistasis effects had major contributions. The broad sense heritability varied from 18 to 42% for thrips damage scores and from 0 to 6% for thrips counts. The estimates of narrow sense heritability were low for thrips damage score (2 to 18%) and thrips counts (0 to 9%). Genotypes TVU-1471 and TVU-1509 were identified as good transmitters of resistance to flower thrips. Crosses TVU-1509 x NE5, TVU-473 x Sanzi, TVU-123 x Sanzi, TVU-123 x TVU-473, and TVU-473 x TVU-1509 presented significant (P<0.05) and negative SCA effects for thrips damage scores and thrips counts and would be the most useful in breeding as some of their progenies would have high resistance to flower thrips. This study provides the basis of an efficient breeding program of cowpea for flower thrips resistance.Item Inheritance of Cowpea Resistance to Flower Thrips in Uganda Germplasm(Journal of Plant Breeding and Crop Science, 2018-01-31) Agbahoungba, Symphorien; Karungi, Jeninah; Edema, Richard; Assogbadjo, Achille E.; Rubaihayo, Patrick R.Flower thrips [Megalurothrips sjostedti (Trybom)] is the most damaging insect pest on cowpea. However, information regarding the nature of gene action governing the inheritance of resistance to thrips is not available for cowpea genotypes in Uganda. This study was carried out to determine the inheritance pattern of cowpea resistance to flower thrips. Five resistant cowpea genotypes and three susceptible genotypes were crossed in full diallel mating design. F2 progenies were evaluated along with the parents in alpha lattice design with two replications under natural thrips infestation at Kabanyolo, Arua and Serere in Uganda. Combining ability analysis was performed using method one and model one of diallel analysis. The results showed that the environmental effects were highly significant (P<0.001). Additive, dominance and epistasis effects had major contributions. The broad sense heritability varied from 18 to 42% for thrips damage scores and from 0 to 6% for thrips counts. The estimates of narrow sense heritability were low for thrips damage score (2 to 18%) and thrips counts (0 to 9%). Genotypes TVU-1471 and TVU-1509 were identified as good transmitters of resistance to flower thrips. Crosses TVU-1509 x NE5, TVU-473 x Sanzi, TVU-123 x Sanzi, TVU-123 x TVU-473, and TVU-473 x TVU-1509 presented significant (P<0.05) and negative SCA effects for thrips damage scores and thrips counts and would be the most useful in breeding as some of their progenies would have high resistance to flower thrips. This study provides the basis of an efficient breeding program of cowpea for flower thrips resistance.Item Maize Combined Insect Resistance Genomic Regions and Their Co-localization With Cell Wall Constituents Revealed by Tissue-Specific QTL Meta-Analyses(Plant Science, 2018) Badji, Arfang; Otim, Michael; Machida, Lewis; Odong, Thomas; Bomet Kwemoi, Daniel; Okii, Dennis; Agbahoungba, Symphorien; Mwila, Natasha; Kumi, Frank; Ibanda, Angele; Mugo, Stephen; Kyamanywa, Samuel; Rubaihayo, PatrickCombinatorial insect attacks on maize leaves, stems, and kernels cause significant yield losses and mycotoxin contaminations. Several small effect quantitative trait loci (QTL) control maize resistance to stem borers and storage pests and are correlated withsecondary metabolites. However, efficient use of QTL in molecular breeding requires a synthesis of the available resistance information. In this study, separate meta-analyses of QTL of maize response to stem borers and storage pests feeding on leaves, stems, and kernels along with maize cell wall constituents discovered in these tissues generated 24 leaf (LIR), 42 stem (SIR), and 20 kernel (KIR) insect resistance meta-QTL (MQTL) of a diverse genetic and geographical background. Most of these MQTL involved resistance to several insect species, therefore, generating a significant interest for multiple-insect resistance breeding. Some of the LIR MQTL such as LIR4, 17, and 22 involve resistance to European corn borer, sugarcane borer, and southwestern corn borer.Item Microsatellites markers associated with resistance to flower bud thrips in a cowpea F2 population derived from genotypes TVU-123 and WC36(African Journal of Biotechnology, 2018) Agbahoungba, Symphorien; Karungi, Jeninah; Sadik, Kassim; Gibson, Paul; Edema, Richard; Assogbadjo, Achille E.; Rubaihayo, Patrick R.Breeding for resistance to flower bud thrips (Megalurothrips sjostedti) in cowpea has been hindered by the quantitative nature of resistance. To identify simple sequence repeat (SSR) markers associated with resistance to flower bud thrips that could be used for marker-assisted breeding, a F2 population was generated from a cross between genotypes TVU-123 (resistant) and WC36 (susceptible). The population was evaluated for thrips damage scores, thrips counts, and pods number per plant under artificial infestation. Sixty-six microsatellites markers were screened between the two parental lines and seven polymorphic markers were used for genotype 100 F2 plants. Single marker analysis was used to evaluate an association between the markers and traits. Transgressive segregation among the F2 plants for resistance to flower thrips was observed. A significant negative relationship was observed between thrips damage scores and pods number per plant. Markers CP37/38 and CP215/216 were significantly associated with thrips damage scores and thrips counts, respectively. The two markers explained 7 and 11.2% of the total variation in thrips damage scores and thrips counts with positive and negative effects, respectively. Mainly additive gene effects were observed. A more detailed study using more markers on these loci should provide better understanding of this complex trait.Item New sources of sorghum resistant genotypes to downy mildew disease in Uganda(BIODIVERSITAS, 2019) Kumi, Frank; Badji, Arfang; Mwila, Natasha; Odong, Thomas; Ochwo-Ssemakula, Mildred; Tusiime, Geoffrey; Gibson, Paul; Biruma, Moses; Prom, Louis K.; Cuevas, Hugo E.; Agbahoungba, Symphorien; Rubaihayo, PatrickKumi F, Badji A, Mwila N, Odong T, Ochwo-Ssemakula M, Tusiime G, Gibson P, Biruma M, Prom KL, Cuevas HE, Agbahoungba S, Rubaihayo P. 2019. New sources of sorghum resistant genotypes to downy mildew disease in Uganda. Biodiversitas 20: 3391-3397. Sorghum downy mildew (SDM) disease is still prevalent in Uganda at varying levels of incidence and severity. In this study, a total of 100 sorghum genotypes, five (5) from (U.SA, India, and Sudan) and 95 genotypes from Uganda were evaluated for resistance to downy mildew and other agronomic traits during the second growing season of 2016 (August-December). The experiment was conducted in two locations at Makerere University Agricultural Research Institute at Kabanyolo (MUARIK) and Abi-Zonal Agricultural Research and Development Institute (Abi-ZARDI) research station at Arua. The experimental design used was 10 x 10 alpha lattice design with three replicates. Data were collected on plant disease incidence (PDI), plant disease severity (PDS), area under disease progress curve (AUDPC), days to 50% flowering, plant height, 1000 seed weight, and grain yield. Results for analysis of variance showed highly significant differences (P < 0.001) in genotypes, location, and AUDPC, yield and yield components. Disease incidence varied significantly (P < 0.001) between locations, and Arua recorded highest disease incidence and severity of 80.6 and 2.8, respectively. Results from correlation analysis showed a highly significant (P < 0.001) positive association of downy mildew disease incidence with AUDPC (0.835) which suggests that the severity of SDM disease increased with disease incidence, whiles significant (P < 0.001) negative correlation was recorded for days to 50 % flowering (-0.302), 1000 seed weight (-0.471), and grain yield (-0.585), suggesting that grain yield and yield component decreased significantly with increase in SDM incidence and severity. Two resistant (PI 656061 and PI 533831) and four moderately resistant (E 40, MAKSO 8, PI 655990 and Epuripur) genotypes were identified from this study. These genotypes were recommended for sorghum breeding program against downy mildew disease.