SHORT COMMUNICATION High proportion of diploid hybrids produced by interspecific diploid 3 tetraploid Sorghum hybridization Stan Cox . Pheonah Nabukalu . Andrew H. Paterson . Wenqian Kong . Susan Auckland . Lisa Rainville . Sheila Cox . Shuwen Wang Received: 4 June 2017 / Accepted: 24 October 2017 � Springer Science+Business Media B.V. 2017 Abstract A perennial version of grain sorghum [S. bicolor (L.) Moench] would create opportunities for greatly reducing tillage and preventing soil degrada- tion. Efforts to select for perenniality and grain production among progeny of hybrids between S. bicolor (2n = 20) and the weedy tetraploid perennial S. halepense (L.) Pers. (2n = 40) are complicated in that F1 hybrids produced by diploid 9 tetraploid sorghum crosses are usually tetraploid. In 2013, a set of random pollinations between 19 diploid cytoplas- mic male-sterile inbred lines and 43 tetraploid peren- nial plants produced 165 F1 hybrid plants, more than 75% of which had highly atypical plant, panicle, and seed phenotypes. Phenotypic segregation in F2 popu- lations derived from atypical hybrids was also anoma- lous. Examination of mitotic metaphase cells in F1 or F2 root tips revealed that 129 of the 165 hybrids were diploid. Parentage of the diploid progenies was confirmed using simple-sequence repeat analysis. The mechanism by which diploid hybrids arise from diploid 9 tetraploid crosses is unknown, but it may involve either production of monohaploid (n = 10) pollen by the tetraploid parent or chromosome elim- ination during early cell divisions following formation of the triploid zygote. The ability to produce diploid germplasm segregating for S. bicolor and S. halepense alleles could have great utility, both for the develop- ment of perennial sorghum and for the improvement of conventional grain sorghum. Keywords Genetic resource � Germplasm enhancement � Sorghum breeding � Ploidy � Perennial � Interspecific hybridization � Chromosome Introduction Development of perennial grain sorghum (Paterson et al. 2013; Nabukalu and Cox 2016) would create opportunities for greatly reducing tillage and other aspects of annual grain sorghum cultivation that damage soil structure and lead to erosion. Efforts to develop perennial sorghum germplasm, underway since 2002, involve producing hybrids between S. bicolor and the weedy perennial grass S. halepense (L.) Pers., selecting for rhizome development and winter survival in segregating populations, backcross- ing to S. bicolor, and repeating the cycle (Nabukalu and Cox 2016). Electronic supplementary material The online version of this article (https://doi.org/10.1007/s10722-017-0580-7) con- tains supplementary material, which is available to authorized users. S. Cox (&) � P. Nabukalu � S. Cox � S. Wang The Land Institute, 2440 E. Water Well Rd., Salina, KS 67401, USA e-mail: cox@landinstitute.org A. H. Paterson � W. Kong � S. Auckland � L. Rainville Plant Genome Mapping Laboratory, University of Georgia, 111 Riverbend Road, Rm 228, Athens, GA 30605, USA 123 Genet Resour Crop Evol DOI 10.1007/s10722-017-0580-7 https://doi.org/10.1007/s10722-017-0580-7 http://crossmark.crossref.org/dialog/?doi=10.1007/s10722-017-0580-7&domain=pdf http://crossmark.crossref.org/dialog/?doi=10.1007/s10722-017-0580-7&domain=pdf S. bicolor is diploid with 2n = 20, while S. halepense is tetraploid with 2n = 40. Hybridization can be accomplished by using an induced tetraploid line of S. bicolor as either the male or the female parent (Piper and Kulakow 1994) or by fertilizing male-sterile diploid S. bicolor plants with pollen from perennial tetraploid plants and obtaining 40-chromo- some hybrids through the infrequent but consistent production of 20-chromosome gametes by the male- sterile parent (Hadley 1958; Nabukalu and Cox 2016). Either process results in tetraploid populations that may be used in selection and germplasm development. In some cases, triploid hybrids occur, but they produce no seed when self-pollinated or pollinated by S. bicolor. Introgressing useful germplasm from S. halepense via tetraploid hybrids presents several disadvantages: it limits the scope of the parental gene pool; the approach to homozygosity with self-pollination is slower than in diploid sorghum; partial sterility is common; and genetic analysis is complicated and difficult (Haldane 1930; Gupta 2007). Perennial sorghum germplasm development will be greatly simplified if alleles for salient traits such as cold tolerance and rhizome development can be introgressed from S. halepense directly into diploid grain sorghum. In published research on controlled hybridization between diploid S. bicolor and S. halepense, chromo- some numbers of hybrids have varied. Hadley (1958) and Sengupta and Weibel (1971) obtained both triploid and tetraploid hybrids. When pollinating thousands of nuclear and cytoplasmic male-sterile panicles with tetraploid plants during 2002–2012 as part of our perennial sorghum germplasm research (Nabukalu and Cox 2016), we obtained hundreds of germinable tetraploid F1 seeds and only one ger- minable triploid seed (although we have often observed shriveled, inviable seeds that we assumed were triploid). Dweikat (2005) reported surprising results from crossing eight nuclear male-sterile (ms3ms3) sorghum plants with S. halepense. Pollinating an estimated 36,000 florets, he obtained 380 shriveled, inviable seeds (presumably triploids) and two normally devel- oped seeds. One of the plants from a normal seed was found to be diploid. Phenotypic and molecular-marker analysis confirmed the plant’s parentage. In 2014, when we grew out 154 F1 plants resulting from pollinations between male-sterile grain sorghum inbred lines and perennial tetraploid plants, a large proportion of them were phenotypically very different from diploid 9 tetraploid F1 plants we had observed in our nurseries over the previous decade. In 2016, after reading for the first time the report by Dweikat (2005), we formed a hypothesis that the phenotypi- cally novel F1 plants we had observed in 2014 were diploids produced by diploid 9 tetraploid pollination, and we began examining chromosome numbers of their F2 progeny. Materials and methods In May, 2013, 43 tetraploid sorghum plants were selected from among the self-pollinated progeny of S. bicolor 9 S. halepense, (S. bicolor 9 S. hale- pense) 9 S. bicolor, or (S. bicolor 9 S. hale- pense) 9 S. bicolor2 hybrids and were used to pollinate inbred lines of grain sorghum carrying A1- type male-sterile cytoplasm (Suppl. Table 1). The perennial parents were tetraploid sorghum plants selected in the course of developing perennial sorghum germplasm (Suppl. Table 1; Nabukalu and Cox 2016). Nineteen different inbred lines produced F1 seed. A total of 154 F1 plants from 55 different parental combinations (Suppl. Table 1) were grown to maturity and harvested. In 2016, 11 remnant F1 seeds from crosses made in 2013 were removed from storage and germinated, and the seedlings were transplanted in the field. These F1 seeds had been produced during the same time period as the 154 hybrids discussed above, using the same pool of parents. In 2016–2017, root tips were obtained from F2 progeny of each of the 154 F1 plants grown in 2014, the 11 F1 plants grown in 2016, and plants derived by self- pollination of themale parents of 2013 crosses. Root tips were fixed and used for determining mitotic metaphase chromosome numbers. The technique was based on procedures reported by Singh (2016) and Sharma and Sharma (2014), with modifications. Slide preparations were examined under a compound light microscope (Axiostar plus; Zeiss, Oberkochem, Germany) with a magnification of 409. Chromosomes were observed, counted and photographed using AxioCamERc5 s camera and Zen 2 (version 10.0) digital imaging software (Zeiss, Oberkochen, Germany). Simple-sequence repeat (SSR) genotyping was used to verify the recorded parentages of a sample of Genet Resour Crop Evol 123 the diploid hybrids. Young leaf tissue was obtained from 13 to 26 seedlings belonging to each of nine F2 populations and from all 11 new F1 plants that were being grown out that year. Leaf tissue was also sampled from 12 seedlings of each male parent and one seedling of each female parent involved in producing the sampled F1 and F2 plants. DNA extraction from leaf samples and SSR genotyping were performed as described by Kong et al. (2013). Results and discussion Phenotypically, the 165 F1 plants grown out in 2014 and 2016 fell into two distinct groups. A minority exhibited traits typically seen in tetraploid hybrids between domesticated sorghum and tetraploid peren- nial plants. Compared with S. bicolor, these hybrids displayed more profuse tillering and upper-node branching, thinner culms, narrower leaves, longer panicle branches, lower seed-set, and smaller seeds. As is typical in such hybrids, seed shattering was delayed or absent. The second group, a majority of the plants, had phenotypes intermediate between the first group of hybrids and S. bicolor. They produced fewer tillers and branches than is typical of tetraploid hybrids. They had thicker culms and wider leaves, shorter panicle branches (panicles would have been classified as semi-compact to semi-lax), higher seed- set, and larger seed than had been seen in tetraploid hybrids in previous years. Some displayed early, complete seed shattering. Somatic chromosome numbers were determined for one random F2 plant from each of 127 populations that we suspected of being diploid on the basis of their F1 parents’ phenotypes and F2 segregation, finding that 121 were indeed diploid and six were tetraploid. Fifteen additional plants that we hypothesized to be tetraploid on the basis of phenotype were examined cytologically as controls, and all were tetraploid. Figures 1 and 2 show images of cells at mitotic metaphase from diploid and tetraploid F2 plants. Chromosome numbers of F2 plants from an additional 15 populations assumed to be tetraploid on the basis of phenotypic segregation were not confirmed cytologically. Of the 11 F1 plants grown in 2016 from remnant seed, we found that eight were diploid and three tetraploid. Adding those counts to those from F2 plants, we concluded that at least 129 of the 165 F1 hybrids produced in 2013 had been diploid and the remainder had been tetraploid (Suppl. Table 1). From each of nine of the diploid hybrids confirmed by counts of 20 chromosomes at mitotic metaphase, Fig. 1 Nucleus at metaphase in a tetraploid F2 plant from the cross KS105A (2n = 20) 9 H6-70-8 (2n = 40) Fig. 2 Nucleus at metaphase in a diploid F2 plant from the cross KS105A 9 H6-70-8 Genet Resour Crop Evol 123 13–26 F2 progeny were screened with 20 SSRs previously known to be polymorphic between BTx623 and Gypsum 9E, one sampling each sorghum chromosome arm (Suppl. Table 2). All eight diploid F1 plants were similarly screened (Supp. Table 3). Among the SSRs, 15 to 18 were informative between the S. bicolor and (S. bicolorn 9 S. halepense) parents of the nine F2 progeny arrays. SSR genotypes of F1 plants and F2 families were consistent with their recorded parentage. Among the nine F2 families, the portion of loci with S. halepense alleles ranged from 13.9 to 33.2%, with a mean of 25%. No individual progeny completely lacked S. halepense alleles, although several had only one. At one locus, Xiabt- p121, no S. halepense allele was found in any plant; other loci showed S. halepense alleles in 1.1–56.3% of individuals, demonstrating that most S. halepense chromosome arms can be recovered in such lines. Among F1 plants, the share of loci with a S. halepense allele derived from the male parent ranged from 8.3 to 75.0%, with an overall presence of 25.9%. The SSR analysis showed that we can recover in diploid x tetraploid hybrids most chromosome arms from the tetraploid parent. Across all loci, the S. halepense allele was detected in 26% of F1 plants and 25% of F2 plants. Those values are consistent with the 25% expected when the tetraploid male parent used to pollinate a diploid plant carries a single copy of the S. halepense allele, and then, as postulated by Dweikat (2005), half of the male parent’s chromosomes are eliminated either during pollen formation or after fertilization. Because the male parents we used were derived from repeated backcrossing to S. bicolor, it would not be surprising if many S. halepense alleles were present as single copies in these parents. More extensive analysis will be required to resolve ques- tions surrounding the transmission of alleles from tetraploid parents to diploid progeny. The parentage of the diploid F1 plant produced by Dweikat (2005) contrasts with the parentage of the diploid hybrids reported herein. His hybrid arose from a cross between a nuclear male-sterile (ms3ms3) S. bicolor plant and a S. halepense plant, whereas ours arose from crosses between cytoplasmic male-sterile plants and species-backcross tetraploid plants. Dwei- kat (2005) hypothesized that his diploid hybrid resulted from either (1) production of a monohaploid (n = 10) gamete by the S. halepense parent or (2) elimination of chromosomes in early cell division following fertilization. With either mechanism, a central question is whether specific chromosomes were selectively retained or eliminated. Further studies will be required to determine which (if either) of Dweikat’s (2005) proposed mechanisms is the cause of diploid production by such crosses and to explain the unprecedented numbers of diploid hybrids we produced in 2013. More broadly, it would be useful to identify genetic or environmental factors that might be manipulated to increase the likelihood that diploid 9 tetraploid sorghum crosses will pro- duce diploid hybrids. The diploid S. bicolor 9 S. halepense germplasm thus produced could have high utility for the development of perennial sorghum and sorghum improvement in general. References Dweikat I (2005) A diploid, interspecific, fertile hybrid from cultivated sorghum, Sorghum bicolor, and the common Johnsongrass weed Sorghum halepense. Mol Breed 16:93–101 Gupta PK (2007) Cytogenetics (2). Rastogi Publications, Meerut Hadley HH (1958) Chromosome numbers, fertility and rhizome expression of hybrids between grain sorghum and john- songrass. Agron J 50:278–282 Haldane JBS (1930) Theoretical genetics of autopolyploids. J Genet 22:359–372 KongW, Jin H, Franks CD, KimC, Bandopadhyay R, RanaMK, Auckland SA, Goff VH, Rainville LK, Burow GB, Woodfin C, Burke JJ, Paterson AH (2013) Genetic analysis of recombinant inbred lines for Sorghum bicolor 9 S. propinquum. G3 3:101–108 Nabukalu P, Cox TS (2016) Response to selection in the initial stages of a perennial sorghum breeding program. Euphyt- ica 209:103–111 Paterson AH, Cox TS, Kong W, Navarro M (2013) Viewpoint: multiple-harvest sorghums toward improved food security. In: Perennial Crops for Food Security, FAO, Rome, pp 90–102 Piper JK, Kulakow PA (1994) Seed yield and biomass allocation in Sorghum bicolor and F1 and backcross generations of S. bicolor 9 S. halepense hybrids. Can J Bot 72:468–474 Sengupta SP, Weibel DE (1971) Cytological study of hybrids of Sorghum halepense (L.) Pers. Proc Okla Acad Sci 51:56–60 Sharma AK, Sharma A (2014) Chromosome techniques: theory and practice, 3rd edn. Butterworth-Heinemann, Oxford Singh RJ (2016) Plant cytogenetics, 3rd edn. CRC Press, New York Genet Resour Crop Evol 123 High proportion of diploid hybrids produced by interspecific diploid x tetraploid Sorghum hybridization Abstract Introduction Materials and methods Results and discussion References